Data Submission

From GBrowse

To contribute to GBrowse.org project, it is simple. Data are anything about:

• creating or completing of model organism wiki pages with links, sequencing or annotation methods (look workflow)
• sending link annotation GFF3 files curated about model organism without official site (look workflow)
• proofreading GBrowse.org wiki page
• linking your site to GBrowse.org
• sending info about:
  • link of official genome browser
  • link of official download MOD site
  • link of annotation files about model organism with MOD
  • when there will be update about official MODs data
  • ..
• ..

GBrowse.org wiki pages

• to request of account, contact GBrowse.org Help Desk
• to create/modify any GBrowse.org wiki page, look Help:Editing
• each GBrowse.org user has got personal wiki pages that it has got a minimal data about contact and how to contribute to the GBrowse.org website. Examples about personal wiki pages are Bilardi and Clements
• to create/modify a model organism wiki pages, look proper template and workflow
• to add sequencing and annotation methods in model organism wiki pages, look Help:Editing about references and how to link. Example about sequencing and annotation methods are these pages
• to create/modify an organization/institution wiki pages, look proper template
• image about model organism wiki page and organization/institution wiki pages are 80 x 80 size

What formats are accepted for ftp.gbrowse.org site

• GFF3 file curated
• CONF file with each track enclosed into GFF3 file sent

It is important that who will download GBrowse.org annotation data, could display it immediately after to insert GFF3 files and CONF files in proper directory of a (local) GBrowse. Who will download GBrowse.org annotation data play it safe that data are curated and updated. In addition, it is important to use sofa.obo file for label new type so who will download GBrowse.org annotation data, could use it into proper schema chado.

What to send

• link about data curated (GFF3 and CONF files)
• origin of annotation data, it is better if you insert one line into GFF3 file as:

##curated by name, official site and/or email

or

##curated by organization/istitution, official site and/or email

GBrowse.org will insert GFF3 file sent from you, after check it. So, if GBrowse.org will not find error into GFF3 file, then will add it into ftp site and will modify model organism wiki page about GFF3 annotation link. You could look the workflow that GBrowse.org operators follow before add new data into ftp site.

If you contact GBrowse.org Help Desk, then GBrowse.org could download data files without check and with according to when there is data update.

Questions

• contact GMOD Help Desk for problem with GBrowse tools and/or other softwares to display and compute GBrowse.org annotation data downloadable
• contact GBrowse.org Help Desk for GBrowse.org informations, suggestions or questions